Data migration process comes with a set of challenges and risks. Learn how to navigate it while ensuring data availability throughout and post-migration.
A QUICK SUMMARY – FOR THE BUSY ONES
Legacy application modernization projects often involve migrating data from outdated systems to more modern environments. This process can present several unique challenges:
TABLE OF CONTENTS
Navigating the process of data migration while ensuring safety is challenging. How can you ensure data consistency, quality, and availability throughout and post-migration? Dive into our comprehensive guide and let us steer you through data migration challenges and best practices.
According to Gartner, 83% of data migration projects fail or exceed the timing and budget. This indicates that data migration can be challenging, and failure can severely affect budget and timing.
Now, let’s analyze each challenge in more detail, checking out how to prepare and acknowledging the cautionary points.
Data loss occurs when critical data is either not transferred or irreversibly altered during migration.
Silent data loss or partial corruption won’t raise red flags on their own﹣that’s what makes them dangerous. To catch them, you need smart checks in place during and right after migration. Start by making sure record counts match between source and target. If they don’t, something’s missing. Use checksums or hash validation (like SHA-256) to confirm data wasn’t silently altered in transit﹣especially for large datasets.
Pay attention to critical fields like IDs, timestamps, and foreign keys. These won’t always throw errors if they go bad, but they can quietly break relationships or logic in your app. Watch your logs during migration﹣timeouts, retries, or skipped records are often signs of trouble, even if the system looks stable on the surface.
After migration, validate the business logic. Are customer balances correct? Do reports still add up? Are workflows running as expected? Run comparisons on sample sets and automate integrity checks wherever possible. If something feels off post-migration﹣slower performance, strange reports, or missing entries﹣it probably is. Trust the data, but verify it ruthlessly.
Stability issues arise when the new platform is inadequately developed or configured.
There are 5 most common application stability challenges:
The risk of data breaches increases during migration due to potential vulnerabilities.
To protect sensitive data during transfer, you need to treat the migration path like a potential attack surface﹣and secure it end to end.
Start by encrypting all data in transit using strong, up-to-date protocols like TLS 1.2 or higher. Don’t rely on the default settings of tools﹣verify that encryption is active and properly configured. If you're transferring files or databases, use secure protocols such as SFTP, HTTPS, or VPN-tunneled channels.
Make sure access is tightly controlled. Only authorized personnel should have visibility into the data being moved. Use role-based access control (RBAC), temporary credentials, and MFA wherever possible. Never store sensitive data temporarily on unencrypted drives or unprotected endpoints﹣even for staging.
Validate the security posture of all third-party tools and services involved in the migration. Check for compliance certifications (like ISO 27001, SOC 2) and ensure they support encrypted transfers and strong access controls.
Lastly, log every access and action, and monitor the transfer in real time. If something goes wrong, you’ll want a full audit trail to diagnose and respond quickly.
In short: encrypt everything, limit access, use trusted tools, and monitor aggressively. Migration is temporary﹣security lapses don’t have to be permanent.
Downtime occurs when the source system is unavailable during migration, affecting operations. Even a short outage can cause lost revenue or reputational damage if it’s unplanned or poorly communicated.
Migrate in chunks﹣often by system module, business unit, or data domain﹣while keeping the existing environment live. This allows you to validate functionality and data integrity step by step, reducing risk.
Best for: Complex environments with tight uptime requirements and interdependencies
Benefit: Easy to isolate and fix issues without disrupting the entire system
Watch out for: Synchronization challenges and managing hybrid (old + new) environments during the interim
Set up a duplicate production environment (“green”) alongside your current one (“blue”), migrate and test everything in green, then switch traffic over when ready.
Best for: Web apps, SaaS platforms, or systems with real-time users
Benefit: Seamless switch with immediate rollback if something fails
Watch out for: Double infrastructure costs during the overlap and syncing live data just before the cutover
Run both old and new systems side by side for a defined period. Compare outputs, monitor stability, and gradually shift processes or users to the new environment.
Best for: Finance, healthcare, or regulated industries that can’t risk sudden changes
Benefit: Full verification of data and behavior before decommissioning the old system
Watch out for: Higher operational complexity and cost of maintaining two live systems
<span class="colorbox1" fs-test-element="box1"><p>Read also: Big Bang Migration vs Trickle Migration Approach in Legacy Modernization [Key Differences & Considerations]</p></span>
Integration with existing systems is one of the most underestimated challenges in data migration and it can be a silent killer of timelines, performance, and user trust. Even if the migration is technically successful, broken integrations can derail workflows, reports, and user experiences.
Ensuring seamless integration between the migrated data/applications and existing systems can be challenging.
Here’s how to check if you’re ready to start integrating:
To ensure the new system integrates seamlessly with existing systems, start by mapping every integration point early﹣APIs, data pipelines, third-party tools, internal automations. Don’t assume anything is “plug and play,” especially with legacy systems.
Build a staging environment that mirrors production, including all integrations. Run real-world test cases﹣simulate user flows, data syncs, and system events, not just isolated API calls. Use contract testing to make sure both sides of an integration (yours and theirs) agree on data formats, field types, and expected responses.
Check for hidden dependencies﹣things like hardcoded credentials, time zone mismatches, or undocumented data transformations. These are common in older systems and often missed until they break.
Monitor during and after the migration using API monitoring tools and logs. Look for silent failures like dropped payloads or delays that don’t cause crashes but still affect workflows. Finally, have a fallback plan: caching, retries, or even temporary parallel systems can keep things running while issues are resolved.
Bottom line: treat integration like a product, not a checklist. It’s not done until it works in production, under load, across all business-critical scenarios.
To avoid nasty surprises during migration, you need to uncover technical, data, and business logic dependencies as early as possible. Here's what to focus on:
Start with system-to-system integrations: APIs, database syncs, file exchanges, webhooks, or message queues. Identify what your current system talks to﹣and what talks back. Include internal tools, third-party platforms, and legacy services still in use.
Next, dig into data dependencies. Look for fields that drive downstream processes﹣customer IDs, status flags, timestamps. If one system expects a certain format or field to be populated, and the new system doesn’t deliver it the same way, things will quietly break.
Watch out for authentication and access dependencies: API keys, SSO configurations, service accounts, and firewall rules. A change in identity or access management can instantly block communication between systems.
Don’t forget business logic dependencies﹣automations, workflows, reports, or decision rules that depend on data from the system being migrated. These are often embedded in low-code platforms, scripts, or user workflows and aren’t always well documented.
Finally, check for infrastructure-level dependencies: hardcoded IP addresses, DNS records, cron jobs, and storage paths that may not work post-migration.
Adhering to regulatory requirements and ensuring data privacy during migration is critical, especially for sensitive data. Unlike functional bugs, compliance violations can result in fines, legal exposure, and lasting reputational damage﹣even if the migration is technically successful.
Before migration begins, you need clear, enforceable data privacy controls in place to protect sensitive information and meet regulatory requirements. Here’s what CTOs need to focus on:
First, identify sensitive data﹣especially personally identifiable information (PII), protected health information (PHI), financial records, and anything covered by GDPR, HIPAA, or industry-specific laws. Classify this data so it gets special handling throughout the migration.
Next, limit access. Only authorized personnel should be able to view or manipulate sensitive data during migration. Use role-based access control (RBAC), temporary credentials, and strict environment segregation (e.g., production data should never be exposed in unsecured test environments).
Encrypt everything﹣at rest and in transit. Use proven standards like TLS 1.2+ for data in motion and AES-256 for storage. Also, ensure that backups and temporary files are encrypted and properly secured.
If data will pass through or land in different geographic regions, verify data residency and sovereignty requirements. For example, GDPR prohibits sending EU citizens’ data to non-compliant jurisdictions without legal safeguards.
In non-production environments, apply data masking or pseudonymization to protect identities while preserving testability.
Finally, log and audit every access, transfer, and transformation. These logs are essential for both security monitoring and proving compliance later.
This occurs when system performance drops due to migration-related changes. The system works﹣but it’s slower, less responsive, or fails under real-world load. A technically successful migration can still feel like a failure if response times slow, user experiences degrade, or critical workflows lag behind expectations.
Start by benchmarking your current system’s performance﹣response times, query speeds, API latency, throughput. This gives you a baseline to compare against during testing in the new environment.
In staging, run load and stress tests that mimic production traffic patterns, peak usage hours, and concurrent users. Use realistic data volumes﹣not small test sets﹣to surface problems in indexing, memory, or network capacity. Tools like JMeter, k6, or LoadRunner can help here.
Pay special attention to database performance. Check for missing indexes, inefficient queries, and changes in schema that could increase read/write costs. Run query profilers or execution plan analysis to spot slowdowns early.
Also test end-to-end workflows﹣including integrations, APIs, file transfers, and background jobs. One slow downstream system or rate-limited third-party API can bottleneck the entire operation.
Finally, instrument everything with application performance monitoring (APM) tools like New Relic, Datadog, or AppDynamics. Watch for latency spikes, memory pressure, and queue buildups. The sooner you catch issues in staging, the less likely they’ll bite you in production.
To distinguish between system degradation and integration lags, you need to isolate and measure each component of your architecture﹣don’t treat performance as a black box.
Start with application performance monitoring (APM) tools like Datadog, New Relic, or Dynatrace. These break down response times by layer: database, backend, third-party APIs, and frontend. If your core app is fast but API calls are slow, you’re dealing with integration lag﹣not internal degradation.
Check latency metrics and error rates for each external dependency﹣CRM systems, payment gateways, analytics tools. High response times or timeouts from one integration can drag down perceived system performance, even if your platform is fine.
Run controlled tests internally﹣temporarily disable external integrations or mock API responses to see how the core system performs alone. If it runs smoothly without external calls, the issue is clearly integration-related.
Also monitor queue buildup or retry spikes. If jobs are queuing up or API retries increase, it usually points to slow or unstable external services﹣not your system’s own processing power.
This challenge arises when there is a mismatch in data formats or protocols between the old and new systems. The new system may work on paper but fail in context if the small details don’t align. The earlier you test real-world use cases, the fewer surprises you’ll face in production.
To know if your old and new systems are compatible before migrating, run a comprehensive schema and format comparison﹣field types, data structures, and naming conventions must align. Use sample data to test transformations, validate business logic, and simulate end-to-end workflows in a staging environment. Also, verify that APIs, integrations, and authentication methods function as expected. Compatibility is about how the systems behave under real conditions. Test early, test with real use cases, and document every assumption.
Common incompatibilities between old and new systems:
Migration can expose data to security risks, both during transfer and in the new environment. Migration expands your attack surface﹣often in ways that don’t exist in daily operations. What’s temporary for engineering may be permanent for an attacker if not shut down properly. Build security into every phase of migration﹣not just the end.
This involves challenges in ensuring the new system integrates smoothly with existing systems and workflows. A working integration isn't the same as a resilient one. Migrations often break the glue between systems﹣not because of bad code, but because real-world complexity wasn’t fully accounted for. Plan, simulate, and monitor every connection like it's a system of its own.
This challenge is about ensuring the accuracy and consistency of data throughout the migration process. Data integrity issues occur when migrated data is incomplete, inaccurate, inconsistent, or misaligned with business rules﹣even though the migration may appear technically successful.
To validate that data is correct﹣not just migrated, you need to go beyond record counts and schema matches. Focus on data meaning, relationships, and business logic.
Start with field-level comparisons using automated scripts to match values between the source and target systems. This includes not just the presence of data, but also correctness﹣e.g., currency values, dates, or status flags matching exactly.
Next, validate referential integrity. Check that every dependent record (like orders, transactions, or tickets) still links to its parent (like customers or accounts). Orphaned records signal broken relationships.
Run business-level validation tests: do reports show expected totals? Are customer balances accurate? Do workflows still trigger properly? If business logic breaks, the data is likely wrong﹣even if technically migrated.
Involve domain experts to manually review critical slices of data. They’ll catch misinterpretations or edge cases automation can miss.
Finally, use reconciliation reports and anomaly monitoring post-migration. Track unexpected nulls, value shifts, and deviations from known benchmarks. The goal: prove the data isn’t just there﹣it’s right and usable.
Cost overruns occur when the migration process is prolonged or encounters unforeseen challenges. Most migrations go over budget not because they fail﹣but because they uncover more than expected. Budget for discovery, not just delivery.
To estimate migration costs realistically up front, focus on breaking the project into clear phases, then assigning time, tools, and talent to each﹣with risk buffers baked in.
Start by scoping the actual data: how much, how complex, how clean? More volume and mess equals more time. Audit the number of systems involved, how they integrate, and whether the data needs transformation or re-mapping.
Next, define the migration lifecycle: planning, environment setup, data profiling, mapping, transformation, validation, testing, go-live, and post-migration support. Estimate effort per phase based on team capacity and historical benchmarks﹣don’t guess.
Include tooling and infrastructure costs (ETL tools, cloud storage, security audits), plus licensing or temporary environments. Factor in personnel costs, including internal time and potential external consultants or contractors.
Finally, add a contingency buffer of 15–30% for surprises﹣like schema mismatches, integration issues, or scope changes. If it's a legacy system, bump that buffer higher.
In short: estimate by phase, include people and tools, and budget for complexity, not just completion.
To avoid mid-project scope creep or gold-plating during migration, you need to set tight boundaries early and enforce them throughout execution.
Start by defining a clear, minimal viable migration scope: what data must be moved, what integrations must work, and what the system must do on Day 1. Align this with business stakeholders and freeze it before execution begins.
Document what’s out of scope just as clearly. If performance tuning, UI redesign, or data cleanup beyond migration isn't part of the plan, state it explicitly.
Use a change control process. Any new request﹣no matter how small﹣should be assessed for impact, timeline, and cost. If it’s critical, replan officially. If it’s nice-to-have, defer it.
Have a strong product or project owner empowered to say no, or at least “not now.” During migration, clarity beats perfection﹣focus on stability, not polishing every edge.
Finally, remind the team: migrate first, optimize later. Gold-plating drains budget and delays delivery without improving business outcomes.
To track migration spending in real time, you need cost visibility baked into your execution workflow, not just in finance reports after the fact.
Start by breaking down your budget by phase and resource type﹣people, tools, infrastructure, and contingency. Assign cost estimates to each sprint, milestone, or deliverable.
Use time tracking tools (e.g., Jira with Tempo, Harvest, or Clockify) to log engineering hours against tasks. Multiply effort by role rates to get real-time labor costs.
For tooling and cloud spend, enable usage-based billing alerts and dashboards﹣AWS, Azure, and GCP all support cost monitoring and forecasting. Track spikes in storage, compute, and bandwidth, especially during migration windows.
Hold weekly cost review standups with your project and finance leads to compare planned vs actual spend. Look for burn rate anomalies﹣unexpected hours, unapproved tooling, or infrastructure running longer than planned.
Finally, use a live burn-up chart or spreadsheet to visualize progress vs budget. This keeps overruns visible early, not just post-mortem.
So how to prepare your organization for data migration? The process should always be carefully planned and preceded with the right definition of project scope, schedule, budget, and risks. This approach will help to avoid extra costs, exceeded deadlines, and business loss.
If you’re not yet sure how to plan the data migration process on your own, feel free to contact us. We will help you navigate through data migration challenges and assist you directly with our advice and data migration best practices.
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